Plots of interaction energy between GRE nucleotides and selected GR DBD amino acids from the right monomer of the 10 Angstrom water layer GR DBD/29 bp GRE model after energy minimization, heating and equilibration (0 picoseconds) and after 600 picoseconds of molecular dynamics. Amino acids are labeled using the Dayhoff one letter code and numbered as in figure 2. Nucleotides are numbered as in figure 2.The sense strand is on top. Codon/anticodon nucleotides reading 5' to 3' for the respective amino acids are boxed.

A. Lysine 461 total interaction energies with GRE nucleotides 17-26 on the sense strand and 33-42 on the antisense strand.
B. Valine 462 VDW interaction energies with GRE nucleotides 15-24 on the sense strand and 35-44 on the antisense strand.

C. Lysine 465 total interaction energies with GRE nucleotides 17-24 on the sense strand and 35-42 on the antisense strand.
D. Arginine 466 total interaction energies with GRE nucleotides 17-25 on the sense strand and 34-42 on the antisense strand.

E.Glutamic acid 469 total interaction energies with GRE nucleotides 17-24 on the sense strand and 35-42 on the antisense strand.
F.Glutamine 471 total interaction energies with GRE nucleotides 13-23 on the sense strand and 36-46 on the antisense strand.